miRBase entry: lja-MIR11147

Stem-loop lja-MIR11147


Accession
MI0035910
Description
Lotus japonicus lja-MIR11147 precursor miRNA


Sequence

uuguuucauggauuggaaaaGGAUUCCCGGGAAUGUUUGGGCCggaaucuacauuccaguguuugguagcagauuugaaaaaaauauucccggguaucuuucauuccugggcaa
.((((.((.(((.((((...((((.(((((((((((((......((((((.....(((.....)))....)))))).....))))))))))))).)))))))).))))))))).

Structure
u    u  u   u    aaa    U             GGGCCg      acauu   g 
 uguu ca gga ugga   GGAU CCCGGGAAUGUUU      gaaucu     cca u
 |||| || ||| ||||   |||| |||||||||||||      ||||||     ||| g
 acgg gu ccu acuu   ucua gggcccuuauaaa      uuuaga     ggu u
a    -  -   u    ---    u             -aaaag      -cgau   u 


Annotation confidence Not enough data
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Genome context
Chr2: 27279589-27279702 [+]

Database links

Mature lja-miR11147-5p

Accession MIMAT0043930
Description Lotus japonicus lja-miR11147-5p mature miRNA
Sequence 21 - GGAUUCCCGGGAAUGUUUGGGCC - 43
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256