miRBase entry: lja-MIR11083e

Stem-loop lja-MIR11083e


Accession
MI0035912
Description
Lotus japonicus lja-MIR11083e precursor miRNA


Sequence

augcaugguugcuuauuggguugcuuaaaugcuauucuggugggcccagacugucacaugGGAUUUAAGCAACUCAUAAGCAAcccaugcau
((((((((((((((((.(((((((((((((.(((((((((.....))))).......)))).))))))))))))))))))))).))))))))

Structure
        -        u             g    -------     u 
augcaugg uugcuuau ggguugcuuaaau cuau       ucugg g
|||||||| |||||||| ||||||||||||| ||||       ||||| g
uacguacc AACGAAUA CUCAACGAAUUUA Ggua       agacc g
        c        -             G    cacuguc     c 


Annotation confidence Not enough data
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Genome context
Chr1: 61764269-61764360 [-]

Database links

Mature lja-miR11083e-3p

Accession MIMAT0043932
Description Lotus japonicus lja-miR11083e-3p mature miRNA
Sequence 61 - GGAUUUAAGCAACUCAUAAGCAA - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256