miRBase entry: lja-MIR5287b

Stem-loop lja-MIR5287b


Accession
MI0035917
Description
Lotus japonicus lja-MIR5287b precursor miRNA


Sequence

agauuacacucuccaaucacauauauaaauaaaaaaacauauucuaaguucauucauuuaaugcauguaccuaguuaauuaaaugaaugaaucuaaaacguauuuuuuugcUUAUAUAUGUGAUCGGAGGGUGUaugaaucu
((((((((((((((.(((((((((((((.((((((((.((.((.((.(((((((((((((((...............))))))))))))))).)).)).)).)))))))).))))))))))))).))))))))))...))))

Structure
    ---          a             a        c  a  c  a               gcaugu 
agau   uacacucucc aucacauauauaa uaaaaaaa au uu ua guucauucauuuaau      a
||||   |||||||||| ||||||||||||| |||||||| || || || |||||||||||||||      c
ucua   aUGUGGGAGG UAGUGUAUAUAUU guuuuuuu ug aa au uaaguaaguaaauua      c
    agu          C             c        a  c  a  c               auugau 


Annotation confidence Not enough data
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Genome context
Chr3: 42705178-42705319 [+]

Database links

Mature lja-miR5287b-3p

Accession MIMAT0043938
Description Lotus japonicus lja-miR5287b-3p mature miRNA
Sequence 112 - UUAUAUAUGUGAUCGGAGGGUGU - 134
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256