miRBase entry: lja-MIR11108f

Stem-loop lja-MIR11108f


Accession
MI0035919
Description
Lotus japonicus lja-MIR11108f precursor miRNA


Sequence

gaccuaugauaaaguuugaGUUAAAUAACCCACCAUCCAAUCacauuggagauaaaugaguuguaaauaaauuaauaaauaaaauauagaaauuucaacucacuuaucuccaauguggUUGGAUGGUGGGUUAUUUAACCCaaacuuuaucauggguc
((((((((((((((((((.((((((((((((((((((((((((((((((((((((.(((((((.((((.......................))))))))))).)))))))))))))))))))))))))))))))))))).))))))))))))))))))

Structure
                  a                                    a       u    aaauuaauaa 
gaccuaugauaaaguuug GUUAAAUAACCCACCAUCCAAUCacauuggagauaa ugaguug aaau          a
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||          u
cuggguacuauuucaaaC CAAUUUAUUGGGUGGUAGGUUgguguaaccucuauu acucaac uuua          a
                  C                                    c       -    aagauauaaa 


Annotation confidence Not enough data
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Genome context
Chr1: 11852693-11852850 [+]

Database links

Mature lja-miR11108f-5p

Accession MIMAT0043940
Description Lotus japonicus lja-miR11108f-5p mature miRNA
Sequence 20 - GUUAAAUAACCCACCAUCCAAUC - 42
Evidence experimental
Illumina [1]

Mature lja-miR11108f-3p

Accession MIMAT0043941
Description Lotus japonicus lja-miR11108f-3p mature miRNA
Sequence 119 - UUGGAUGGUGGGUUAUUUAACCC - 141
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256