miRBase entry: lja-MIR11152

Stem-loop lja-MIR11152


Accession
MI0035924
Description
Lotus japonicus lja-MIR11152 precursor miRNA


Sequence

ucaccugacagugucauGUUGAAAUUUAGUGUCUAUCUCUCucuucauacuuauuaaauauuuauaaagagagagguagaaauaaaguuucacaugacaauaucauuuga
(((..(((...((((((((.(((((((.((.((((((((((((((.(((..(((...)))..))).)))))))))))))).)).)))))))))))))))...)))..)))

Structure
   cc   cag        U       A  G              c   cu   u 
uca  uga   ugucauGU GAAAUUU GU UCUAUCUCUCucuu aua  uau  
|||  |||   |||||||| ||||||| || |||||||||||||| |||  ||| a
agu  acu   acaguaca cuuugaa ua agauggagagagaa uau  aua  
   uu   aua        -       a  a              a   uu   a 


Annotation confidence Not enough data
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Genome context
Chr4: 1013398-1013507 [+]

Database links

Mature lja-miR11152-5p

Accession MIMAT0043946
Description Lotus japonicus lja-miR11152-5p mature miRNA
Sequence 18 - GUUGAAAUUUAGUGUCUAUCUCUC - 41
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256