Stem-loop lja-MIR11103e

Accession

MI0035935

Description

Lotus japonicus lja-MIR11103e precursor miRNA

Sequence

cgggcugagauccucuccaguggauuuaucucaguuuuucucaaguggacauuuguggcgguuucgaaccguaaaaaaauguugccagaugccacaaaugcugucaauuuuuugcagcagcauuuuguggcggcuggaaaauuuuuguggcguuucaaaaccgccacaaauguccacuaaagaaaaauugaagAGAAAUCUACUGGAGAGGAUCUGGacccg
((((.(.((((((((((((((((((((.(((((((((((((..(((((((((((((((((((((.(((.(((..((((((....((((.((((((((((((((((((....)))..)))))).))))))))).))))...))))))...))).))).)))))))))))))))))))))..)))))))))).))).)))))))))))))))))))).).))))

Structure

    c g                    a   -          ca                     c   c   -aa      guug    a         -      --   u 
cggg u agauccucuccaguggauuu ucu caguuuuucu  aguggacauuuguggcgguuu gaa cgu   aaaaau    ccag ugccacaaa ugcugu  caa u
|||| | |||||||||||||||||||| ||| ||||||||||  ||||||||||||||||||||| ||| |||   ||||||    |||| ||||||||| ||||||  |||  
gccc G UCUAGGAGAGGUCAUCUAAA Aga guuaaaaaga  ucaccuguaaacaccgccaaa cuu gcg   uuuuua    gguc gcgguguuu acgacg  guu u
    a G                    G   a          aa                     a   u   gug      -aaa    g         u      ac   u 

Annotation confidence Not enough data

Genome context

Chr1: 17152128-17152349 [-]

Mature lja-miR11103e-3p

• Accession: MIMAT0043957
• Description: Lotus japonicus lja-miR11103e-3p mature miRNA
• Sequence: 194 - AGAAAUCUACUGGAGAGGAUCUGG - 217
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256