miRBase entry: lja-MIR11163

Stem-loop lja-MIR11163


Accession
MI0035939
Description
Lotus japonicus lja-MIR11163 precursor miRNA


Sequence

gaccguggcaauaAGGUCUCUAUUGCCACGGUUAAGCgcguagccguggccauauguguacccuauugccacgguuaaguauguaaccguggccauauguggauucuauugccacgguuacacuugaugaccuguggcaauaggcuaaccaauugacacgguucaaccuugaaccguggcaauagagcaauugccacgcuc
((.(((((((((...(.(((((((((((((((((((.(...(((((((..((..((.((..((((((((((((((((....((((((((((((.(((.(......)))).)))))))))))).....))))).)))))))))))...))))..)).)))))))...))))).)))))))))))))))).))))))))).))

Structure
  c         aAG U               -    C cgu       gc  ua  u  -ac           -     -agua            c   u ug 
ga cguggcaau   G CUCUAUUGCCACGGU UAAG g   agccgug  ca  ug gu   ccuauugccac gguua     uguaaccguggc aua g  g
|| |||||||||   | ||||||||||||||| |||| |   |||||||  ||  || ||   ||||||||||| |||||     |||||||||||| ||| |   
cu gcaccguua   c gagauaacggugcca guuc c   uuggcac  gu  ac ca   ggauaacggug ccagu     acauuggcaccg uau c  a
  c         --a -               a    - aac       -a  ua  -  auc           u     aguuc            u   - uu 


Annotation confidence Not enough data
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Genome context
Chr1: 46765309-46765509 [+]

Database links

Mature lja-miR11163-5p

Accession MIMAT0043961
Description Lotus japonicus lja-miR11163-5p mature miRNA
Sequence 14 - AGGUCUCUAUUGCCACGGUUAAGC - 37
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256