miRBase entry: lja-MIR11167

Stem-loop lja-MIR11167


Accession
MI0035949
Description
Lotus japonicus lja-MIR11167 precursor miRNA


Sequence

aagagauaaauauGAAAAUGGUCUCUAAACUAUGAGCgaaaauugguuuugguccccgccggcguaacuucuggaaauauucccuccagugcggugaaccaccgugccugagauuugguccggccauuuccggcacggugguucgcuucacaggaggaacuauuuucggaaguuacgcaggcgagggaccaaaaccagcuuucgcucauaguucaggaaccauuaucauauuuaucccuu
(((.(((((((((((.((((((.(((.((((((((((((((.((((((((((((((((((.((((((((((((((((((...(((((.(((.((((((((((((((((.((((..((((...)))))))).)))))))))))))))).))).)))))...)))))))))))))))))).)))).)))))))))))))).)))))))))))))).))).)))))).))))))))))).)))

Structure
   a           A      C   A              a              -    g                  uuc     a   c                u    uu    c 
aag gauaaauauGA AAUGGU UCU AACUAUGAGCgaaa uugguuuugguccc cgcc gcguaacuucuggaaaua   ccucc gug ggugaaccaccgugcc gaga  uggu  
||| ||||||||||| |||||| ||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||   ||||| ||| |||||||||||||||| ||||  |||| c
uuc cuauuuauacu uuacca gga uugauacucgcuuu gaccaaaaccaggg gcgg cgcauugaaggcuuuuau   ggagg cac ucgcuugguggcacgg cuuu  accg  
   c           a      a   c              c              a    a                  caa     a   u                c    --    g 


Annotation confidence Not enough data
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Genome context
Chr2: 12541485-12541724 [+]

Database links

Mature lja-miR11167-5p

Accession MIMAT0043971
Description Lotus japonicus lja-miR11167-5p mature miRNA
Sequence 14 - GAAAAUGGUCUCUAAACUAUGAGC - 37
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256