miRBase entry: lja-MIR1120

Stem-loop lja-MIR1120


Accession
MI0035951
Description
Lotus japonicus lja-MIR1120 precursor miRNA


Sequence

acgguuaccugaaugauuuacacuacuucauccguccccuauuauaagacccuuuauugucagacaguaauGAGUCUUAUAAUAAGGGACGGAGGgaguauuauuuuuaacaccgu
(((((.....((((((.......((((((.((((((((.(((((((((((.(.(((((((...))))))).).))))))))))).)))))))).)))))))))))).....)))))

Structure
     uaccu      uuuacac      a        c           c u       c 
acggu     gaauga       uacuuc uccguccc uauuauaagac c uuauugu  
|||||     ||||||       |||||| |||||||| ||||||||||| | ||||||| a
ugcca     uuuauu       augagG AGGCAGGG AUAAUAUUCUG G aaugaca  
     caauu      -------      G        A           A u       g 


Annotation confidence Not enough data
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Genome context
Chr3: 8550890-8551005 [-]

Database links

Mature lja-miR1120-3p

Accession MIMAT0043973
Description Lotus japonicus lja-miR1120-3p mature miRNA
Sequence 72 - GAGUCUUAUAAUAAGGGACGGAGG - 95
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256