miRBase entry: lja-MIR11078g

Stem-loop lja-MIR11078g


Accession
MI0035958
Description
Lotus japonicus lja-MIR11078g precursor miRNA


Sequence

acauugucaaccaaucaaauuucaauaaugcgucaugucaauuaauaaaauuaaauaaacgauagauauucucacaucuuUAAAAUCUGAUUGGCUGACGGUGU
(((((((((.(((((((.((((.((..(((.(..(((((.(((.................))).)))))...).)))..)).)))).))))))).)))))))))

Structure
         a       a    c  ua   c -uc     a   aauaaaa 
acauuguca ccaauca auuu aa  aug g   auguc auu       u
||||||||| ||||||| |||| ||  ||| |   ||||| |||       u
UGUGGCAGU GGUUAGU UAAA Uu  uac c   uauag uag       a
         C       C    A  uc   a ucu     a   caaauaa 


Annotation confidence Not enough data
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Genome context
Chr3: 29973317-29973420 [-]

Database links

Mature lja-miR11078g-3p

Accession MIMAT0043981
Description Lotus japonicus lja-miR11078g-3p mature miRNA
Sequence 81 - UAAAAUCUGAUUGGCUGACGGUGU - 104
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256