miRBase entry: lja-MIR11097f

Stem-loop lja-MIR11097f


Accession
MI0035968
Description
Lotus japonicus lja-MIR11097f precursor miRNA


Sequence

gcacugucaguauaaacauuuuUUUAUACAGACGUCCAAUGAUAGGuuguuaagucauaaaauaagcuuuuaauuuaauuaaaauaaaaaugaucauaaaugcauuugaauacgugacauuccguuauuggacgucuguguaaaaauguuuuacacugacaaugc
(((.(((((((..(((((((((..(((((((((((((((((((.((.(((((.((....((((..((.((((.....(((........))).....)))).))))))....)).))))).)).))))))))))))))))))))))))))))...))))))).)))

Structure
   c       -au         UU                   A  u     a  caua    aa  u    auuua   aaa 
gca ugucagu   aaacauuuu  UAUACAGACGUCCAAUGAU GG uguua gu    aaau  gc uuua     auu   a
||| |||||||   |||||||||  ||||||||||||||||||| || ||||| ||    ||||  || ||||     |||    
cgu acaguca   uuuguaaaa  augugucugcagguuauug cu acagu ca    uuua  cg aaau     uaa   u
   a       cau         --                   c  u     g  uaag    --  u    acuag   aaa 


Annotation confidence Not enough data
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Genome context
Chr2: 18775562-18775726 [+]

Database links

Mature lja-miR11097f-5p

Accession MIMAT0043992
Description Lotus japonicus lja-miR11097f-5p mature miRNA
Sequence 23 - UUUAUACAGACGUCCAAUGAUAGG - 46
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256