miRBase entry: lja-MIR11155e

Stem-loop lja-MIR11155e


Accession
MI0035970
Description
Lotus japonicus lja-MIR11155e precursor miRNA


Sequence

augguauaaugaguccaugauUUUGUAAGCGAGUUUGAUUUUAGUcucucgacggaaaaaacgucaguguuuugccgaaugauuaaaaucaaacuugcuugcauuuuguaggcugcggacuaucucggcauuccaagccuuuuggaguuaaccucaugugccau
((((((((.((((..........(((((((((((((((((((((((..(((.(((((...((....)).))))).)))..)))))))))))))))))))))))........((((.(((...)))))))(((((((.....)))))))....))))))))))))

Structure
        a    ---------------------------------------uccaugauUU                       uc   a     aaa  g 
augguaua ugag                                                 UGUAAGCGAGUUUGAUUUUAGUc  ucg cggaa   ac u
|||||||| ||||                                                 |||||||||||||||||||||||  ||| |||||   ||  
uaccgugu acuc                                                 acguucguucaaacuaaaauuag  agc guuuu   ug c
        -    caauugagguuuuccgaaccuuacggcucuaucaggcgucggauguuuu                       ua   c     --g  a 


Annotation confidence Not enough data
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Genome context
Chr2: 40650573-40650736 [+]

Database links

Mature lja-miR11155e-5p

Accession MIMAT0043994
Description Lotus japonicus lja-miR11155e-5p mature miRNA
Sequence 22 - UUUGUAAGCGAGUUUGAUUUUAGU - 45
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256