Stem-loop fhe-bantam

Accession

MI0037100

Description

Fasciola hepatica fhe-bantam precursor miRNA

Literature search

2 open access papers mention fhe-bantam
(4 sentences)

Sequence

cagcucuucucgcgugcucugagacaaucaccagguuuugccccaaaggucggcccuggcaguggcaauagcccucucUGAGAUCGCGAUUAAAGCUGGU
(((((.(..(((((..(((.((((......(((((.((.(((.....))).)).)))))....(((....))).)))).)))..)))))..).)))))..

Structure

--     c uc     ug   u    ---------caauca     u  u   c 
  cagcu u  ucgcg  cuc gaga               ccagg uu gcc c
  ||||| |  |||||  ||| ||||               ||||| || ||| a
  GUCGA A  AGCGC  GAG cucu               ggucc gg ugg a
UG     A UU     UA   U    cccgauaacggugac     c  c   a 

Annotation confidence Not enough data

Genome context

scaffold2423: 167396-167495 [+]

Mature fhe-bantam

• Accession: MIMAT0045198
• Description: Fasciola hepatica fhe-bantam mature miRNA
• Sequence: 79 - UGAGAUCGCGAUUAAAGCUGGU - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26432296
   The miRnome of Fasciola hepatica juveniles endorses the existence of a reduced set of highly divergent micro RNAs in parasitic flatworms
   "Fontenla S, Dell'Oca N, Smircich P, Tort JF, Siles-Lucas M"
   "Int J Parasitol (2015) 45:901-913