Stem-loop sequence mes-MIR397b

Accession

MI0037906 (change log)

Description

Manihot esculenta miR397b stem-loop

Literature search

2 open access papers mention mes-MIR397b
(5 sentences)

Stem-loop

   aauaa a      --au           c                a    ---u      c     u 
5'      g uuccag    uggagaaacau auugagugcagcguug ugaa    ucccug aauuu c
        | ||||||    ||||||||||| |||||||||||||||| ||||    |||||| |||||  
3'      c aagguc    acuuuuuugua uaacuuacgucgcgac acuu    aggggu uuaag u
   cguug a      auuc           c                c    uagu      -     g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Cassava4): scaffold09000: 647747-647876 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0037906

Mature sequence mes-miR397b

• Accession: MIMAT0045970
• Sequence: 26 - ucauugagugcagcguugaug - 46
• Evidence: experimental; Illumina [1]

References

1. PMID:26822616 "High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs" Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN BMC Genomics. 17:85(2016).