miRBase entry: mes-MIR397b

Stem-loop mes-MIR397b


Accession
MI0037906
Description
Manihot esculenta mes-MIR397b precursor miRNA

Literature search
2 open access papers mention mes-MIR397b
(5 sentences)

Sequence

aauaagauuccagauuggagaaacaUCAUUGAGUGCAGCGUUGAUGaauucccugcaauuuucuggaauuuggggaugauuucaccagcgcugcauucaaucauguuuuuucacuuacuggaaacguugc
.......((((((..(((((((((((.((((((((((((((((.((((.((((((.(((((....)))))))))))....)))).)))))))))))))))).)))))))))))....)))))).......

Structure
aauaaga      --au           C                A    ---u      c     u 
       uuccag    uggagaaacaU AUUGAGUGCAGCGUUG UGaa    ucccug aauuu c
       ||||||    ||||||||||| |||||||||||||||| ||||    |||||| |||||  
       aagguc    acuuuuuugua uaacuuacgucgcgac acuu    aggggu uuaag u
cguugca      auuc           c                c    uagu      -     g 


Annotation confidence Not enough data
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Genome context
scaffold09000: 647747-647876 [-]

Database links

Mature mes-miR397b

Accession MIMAT0045970
Description Manihot esculenta mes-miR397b mature miRNA
Sequence 26 - UCAUUGAGUGCAGCGUUGAUG - 46
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26822616
    High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
    Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
    BMC Genomics (2016) 17:85