miRBase entry: mes-MIR398

Stem-loop mes-MIR398


Accession
MI0037907
Description
Manihot esculenta mes-MIR398 precursor miRNA

Literature search
7 open access papers mention mes-MIR398
(10 sentences)

Sequence

uuugaaaauguggaggauuccuacaggagcgaccugagaucacauguggacacccuaagaucuucccuuaucuuccaaggauuguguucuuaUGUGUUCUCAGGUCGCCCCUGccgggcuuccuccgccacuugauga
.........((((((((..(((.((((.(((((((((((.((((((.((((((((((((((........)))))...)))...)))))).)))))).))))))))))).))))..)))..))))))))..........

Structure
-uuugaaaau        uu   -a    a           u      u      ---   ---     cuu 
          guggagga  ccu  cagg gcgaccugaga cacaug ggacac   ccu   aagau   c
          ||||||||  |||  |||| ||||||||||| |||||| ||||||   |||   |||||    
          cgccuccu  ggg  GUCC CGCUGGACUCU GUGUau cuugug   gga   uucua   c
aguaguucac        uc   cc    C           U      u      uua   acc     uuc 


Annotation confidence Not enough data
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Genome context
scaffold07991: 99841-99978 [+]

Database links

Mature mes-miR398

Accession MIMAT0045971
Description Manihot esculenta mes-miR398 mature miRNA
Sequence 93 - UGUGUUCUCAGGUCGCCCCUG - 113
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26822616
    High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
    Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
    BMC Genomics (2016) 17:85