Stem-loop sequence mes-MIR398

Accession

MI0037907 (change log)

Description

Manihot esculenta miR398 stem-loop

Literature search

7 open access papers mention mes-MIR398
(10 sentences)

Stem-loop

   -uuugaaaau        uu   -a    a           u      u      ---   ---     cuu 
5'           guggagga  ccu  cagg gcgaccugaga cacaug ggacac   ccu   aagau   c
             ||||||||  |||  |||| ||||||||||| |||||| ||||||   |||   |||||    
3'           cgccuccu  ggg  gucc cgcuggacucu guguau cuugug   gga   uucua   c
   aguaguucac        uc   cc    c           u      u      uua   acc     uuc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Cassava4): scaffold07991: 99841-99978 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0037907

Mature sequence mes-miR398

• Accession: MIMAT0045971
• Sequence: 93 - uguguucucaggucgccccug - 113
• Evidence: experimental; Illumina [1]

References

1. PMID:26822616 "High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs" Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN BMC Genomics. 17:85(2016).