miRBase entry: mes-MIR535c

Stem-loop mes-MIR535c


Accession
MI0037916
Description
Manihot esculenta mes-MIR535c precursor miRNA

Literature search
4 open access papers mention mes-MIR535c
(12 sentences)

Sequence

auugccuuagcuuugacauaauuggUUGACGACGAGAGAGAGCACAcuuguuagcauucaugcuguggucaugggcgucuauaagugugcucucugccgucgucauacaauauggucaaagaagguuuaucuu
...(((((..(((((((...((((..((((((((..(((((((((((((((..((.(((((((....).)))))).))..)))))))))))))))..))))))))..))))...)))))))))))).......

Structure
----auu     ag       aua    gU        AG               ua  a      - u 
       gccuu  cuuugac   auug  UGACGACG  AGAGAGCACAcuugu  gc uucaug c g
       |||||  |||||||   ||||  ||||||||  |||||||||||||||  || |||||| |  
       uggaa  gaaacug   uaac  acugcugc  ucucucgugugaaua  ug ggguac g u
uucuauu     --       gua    au        cg               uc  c      u g 


Annotation confidence Not enough data
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Genome context
scaffold05782: 12520-12652 [-]

Database links

Mature mes-miR535c

Accession MIMAT0045980
Description Manihot esculenta mes-miR535c mature miRNA
Sequence 26 - UUGACGACGAGAGAGAGCACA - 46
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26822616
    High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
    Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
    BMC Genomics (2016) 17:85