Stem-loop sequence pte-mir-125a

Accession

MI0038019 (change log)

Description

Parasteatoda tepidariorum miR-125a stem-loop

Literature search

1 open access papers mention pte-mir-125a
(4 sentences)

Stem-loop

   --uc       cc        c  u   c 
5'     ccugaga  cuaacuug ga ggc c
       |||||||  |||||||| || |||  
3'     ggacucu  gauuggac cu cug g
   uuuu       ua        c  -   g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: Scf5bK3_446: 4938741-4938797 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0038019

Mature sequence pte-miR-125a-5p

• Accession: MIMAT0046092
• Sequence: 1 - ucccugagacccuaacuugcga - 22
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-125a-3p

• Accession: MIMAT0046093
• Sequence: 36 - ccagguuagauucucagguuuu - 57
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).