Stem-loop sequence pte-mir-193a

Accession

MI0038024 (change log)

Description

Parasteatoda tepidariorum miR-193a stem-loop

Literature search

1 open access papers mention pte-mir-193a
(2 sentences)

Stem-loop

   --           u  a  ga     ugacuu 
5'   cgggauuuagc gg cu  uggac      c
     ||||||||||| || ||  |||||       
3'   gcccugaauug cc gg  aucug      a
   ga           u  -  uc     uuaaag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: Scf5bK3_535: 370440-370502 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0038024

Mature sequence pte-miR-193a-5p

• Accession: MIMAT0046101
• Sequence: 1 - cgggauuuagcuggacugaugga - 23
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-193a-3p

• Accession: MIMAT0046102
• Sequence: 42 - uacuggccuguuaagucccgag - 63
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).