Stem-loop sequence pte-mir-2b-2

Accession

MI0038044 (change log)

Description

Parasteatoda tepidariorum miR-2b-2 stem-loop

Literature search

2 open access papers mention pte-mir-2b-2
(17 sentences)

Stem-loop

   --    -     -   g    u     uu gu 
5'   cuca caaag ugg ugug auaug  a  a
     |||| ||||| ||| |||| |||||  |   
3'   gagu guuuc acc acac uauac  u  g
   gc    a     g   g    -     uu aa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: Scf5bK3_5995: 359128-359188 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pte-mir-2b-2

• pte-mir-71-1: Scf5bK3_5995: 356520-356577 [+]
• pte-mir-2e: Scf5bK3_5995: 356661-356719 [+]
• pte-mir-2c: Scf5bK3_5995: 356792-356849 [+]
• pte-mir-2b-2: Scf5bK3_5995: 359128-359188 [+]
• pte-mir-2g-2: Scf5bK3_5995: 359230-359289 [+]
• pte-mir-2g-1: Scf5bK3_5995: 359336-359391 [+]
• pte-mir-2d: Scf5bK3_5995: 359448-359508 [+]

Database links

• miRBase Tracker:MI0038044

Mature sequence pte-miR-2b-2-5p

• Accession: MIMAT0046140
• Sequence: 1 - cucacaaaguggguguguauaug - 23
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-2b-3p

• Accession: MIMAT0046139
• Sequence: 38 - uaucacagccagcuuugaugagcg - 61
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).