miRBase entry: pte-mir-317

Stem-loop pte-mir-317


Accession
MI0038054
Description
Parasteatoda tepidariorum pte-mir-317 precursor miRNA


Sequence

CGAGAGCCUCCCUGCGUUCACAagugccguuugcuuucugUGAACACAGCUGGUGGUAUCUCAGU
.(((((((.(((((.(((((((...((.....))....))))))).)))..)).))).))))...

Structure
--C    -   U  --   C       -agu  c 
   GAGA GCC CC  CUG GUUCACA    gc g
   |||| ||| ||  ||| |||||||    || u
   CUCU UGG GG  GAC CAAGUgu    cg u
UGA    A   U  UC   A       cuuu  u 


Annotation confidence Not enough data
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Genome context
Scf5bK3_269: 1823433-1823497 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pte-mir-317
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-317-5p

Accession MIMAT0046158
Description Parasteatoda tepidariorum pte-miR-317-5p mature miRNA
Sequence 1 - CGAGAGCCUCCCUGCGUUCACA - 22
Evidence experimental
Illumina [1]

Mature pte-miR-317-3p

Accession MIMAT0046159
Description Parasteatoda tepidariorum pte-miR-317-3p mature miRNA
Sequence 41 - UGAACACAGCUGGUGGUAUCUCAGU - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144