miRBase entry: pte-mir-35z

Stem-loop pte-mir-35z


Accession
MI0038073
Description
Parasteatoda tepidariorum pte-mir-35z precursor miRNA


Sequence

AGAAUAUUUCAUACGGUUGACUUguauuuuuaaacaaaAUCAUCGUUUAAAAUAUUCAUU
.((((((((...(((((.((.((((........))))..)))))))...))))))))...

Structure
--A        CAU     U  -C    auu 
   GAAUAUUU   ACGGU GA  UUgu   u
   ||||||||   ||||| ||  ||||    
   CUUAUAAA   UGCUA CU  aaca   u
UUA        AUU     -  Aa    aau 


Annotation confidence Not enough data
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Genome context
Scf5bK3_786: 6406386-6406445 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from pte-mir-35z
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-35z-5p

Accession MIMAT0046192
Description Parasteatoda tepidariorum pte-miR-35z-5p mature miRNA
Sequence 1 - AGAAUAUUUCAUACGGUUGACUU - 23
Evidence experimental
Illumina [1]

Mature pte-miR-35z-3p

Accession MIMAT0046193
Description Parasteatoda tepidariorum pte-miR-35z-3p mature miRNA
Sequence 39 - AUCAUCGUUUAAAAUAUUCAUU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144