miRBase entry: pte-mir-11962a

Stem-loop pte-mir-11962a


Accession
MI0038144
Description
Parasteatoda tepidariorum pte-mir-11962a precursor miRNA


Sequence

CAUAUUUCAGAAAUGGCAUCAAguaauuuucacaacuGAUGUCAUUUUUGAAGUAUGCA
(((((((((((((((((((((.((..........)))))))))))))))))))))))..

Structure
--                     A  aauu 
  CAUAUUUCAGAAAUGGCAUCA gu    u
  ||||||||||||||||||||| ||     
  GUAUGAAGUUUUUACUGUAGu ca    u
AC                     -  acac 


Annotation confidence Not enough data
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Genome context
Scf5bK3_265: 10546954-10547012 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pte-mir-11962a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-11962a-5p

Accession MIMAT0046312
Description Parasteatoda tepidariorum pte-miR-11962a-5p mature miRNA
Sequence 1 - CAUAUUUCAGAAAUGGCAUCAA - 22
Evidence experimental
Illumina [1]

Mature pte-miR-11962a-3p

Accession MIMAT0046313
Description Parasteatoda tepidariorum pte-miR-11962a-3p mature miRNA
Sequence 38 - GAUGUCAUUUUUGAAGUAUGCA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144