miRBase entry: cpo-let-7e

Stem-loop cpo-let-7e


Accession
MI0038546
Description
Cavia porcellus cpo-let-7e precursor miRNA


Sequence

UGAGGUAGGAGGUUGUAUAGUUgagaaggacacccaaggagaucaCUAUACGGCCUCCUAGCUUUCC
.(((.((((((((((((((((.((...((....)).......)))))))))))))))))).)))...

Structure
--U   G                U  ----gaa  a 
   GAG UAGGAGGUUGUAUAGU ga       gg c
   ||| |||||||||||||||| ||       ||  
   UUC AUCCUCCGGCAUAUCa cu       cc a
CCU   G                -  agaggaa  c 


Annotation confidence Not enough data
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Genome context
DS562925.1: 6340207-6340273 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cpo-let-7e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-let-7e-5p

Accession MIMAT0046826
Description Cavia porcellus cpo-let-7e-5p mature miRNA
Sequence 1 - UGAGGUAGGAGGUUGUAUAGUU - 22
Evidence experimental
Illumina [1]

Mature cpo-let-7e-3p

Accession MIMAT0046827
Description Cavia porcellus cpo-let-7e-3p mature miRNA
Sequence 46 - CUAUACGGCCUCCUAGCUUUCC - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344