miRBase entry: cpo-let-7f-2

Stem-loop cpo-let-7f-2

Accession

MI0038548

Description

Cavia porcellus cpo-let-7f-2 precursor miRNA

Sequence

UGAGGUAGUAGAUUGUAUAGUUuuagggucauaccccaucuuggagauaaCUAUACAGUCUACUGUCUUUCC
.((((((((((((((((((((((((((((........))))))))....))))))))))))))))))))...

Structure

--U                    ----        cau 
   GAGGUAGUAGAUUGUAUAGU    Uuuagggu   a
   ||||||||||||||||||||    ||||||||    
   UUCUGUCAUCUGACAUAUCa    agguucua   c
CCU                    auag        ccc

Annotation confidence Not enough data

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Genome context

DS562994.1: 1794194-1794265 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-let-7f-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-let-7f-5p

Accession	MIMAT0046828
Description	Cavia porcellus cpo-let-7f-5p mature miRNA
Sequence	1 - UGAGGUAGUAGAUUGUAUAGUU - 22
Evidence	experimental Illumina [1]

Mature cpo-let-7f-2-3p

Accession	MIMAT0046830
Description	Cavia porcellus cpo-let-7f-2-3p mature miRNA
Sequence	51 - CUAUACAGUCUACUGUCUUUCC - 72
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344