miRBase entry: cpo-mir-15b

Stem-loop cpo-mir-15b


Accession
MI0038562
Description
Cavia porcellus cpo-mir-15b precursor miRNA


Sequence

UAGCAGCACAUCAUGAUUUACAuacguuagucaagaugCGAAUCAUUAUAUGCUGCUCUA
.(((((((.((.(((((((.(((.(.........)))).))))))).)).)))))))...

Structure
--U       C  C       A   a guu 
   AGCAGCA AU AUGAUUU CAu c   a
   ||||||| || ||||||| ||| |   g
   UCGUCGU UA UACUAAG gua g   u
AUC       A  U       C   - aac 


Annotation confidence Not enough data
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Genome context
DS562863.1: 57379064-57379123 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpo-mir-15b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-15b-5p

Accession MIMAT0046851
Description Cavia porcellus cpo-miR-15b-5p mature miRNA
Sequence 1 - UAGCAGCACAUCAUGAUUUACA - 22
Evidence experimental
Illumina [1]

Mature cpo-miR-15b-3p

Accession MIMAT0046852
Description Cavia porcellus cpo-miR-15b-3p mature miRNA
Sequence 39 - CGAAUCAUUAUAUGCUGCUCUA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344