miRBase entry: cpo-mir-16a

Stem-loop cpo-mir-16a


Accession
MI0038563
Description
Cavia porcellus cpo-mir-16a precursor miRNA


Sequence

UAGCAGCACGUAAAUAUUGGUGuuaagauucuaaaauuaucuCCAGUAUUAACUGUGCUGCUGAA
(((((((((((.((((((((.(.(((..........))).).)))))))).)).)))))))))..

Structure
--         -  A        U u   gauu 
  UAGCAGCAC GU AAUAUUGG G uaa    c
  ||||||||| || |||||||| | |||     
  GUCGUCGUG CA UUAUGACC c auu    u
AA         U  A        u u   aaaa 


Annotation confidence Not enough data
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Genome context
DS562861.1: 59875390-59875454 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cpo-mir-16a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-16a-5p

Accession MIMAT0046853
Description Cavia porcellus cpo-miR-16a-5p mature miRNA
Sequence 1 - UAGCAGCACGUAAAUAUUGGUG - 22
Evidence experimental
Illumina [1]

Mature cpo-miR-16a-3p

Accession MIMAT0046854
Description Cavia porcellus cpo-miR-16a-3p mature miRNA
Sequence 43 - CCAGUAUUAACUGUGCUGCUGAA - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344