miRBase entry: cpo-mir-17

Stem-loop cpo-mir-17


Accession
MI0038565
Description
Cavia porcellus cpo-mir-17 precursor miRNA

Literature search
1 open access papers mention cpo-mir-17
(1 sentences)

Sequence

CAAAGUGCUUACAGUGCAGGUAGugauaugugcaucuACUGCAGUGAAGGCACUUGUAG
..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))....

Structure
--CA        A  G     G   -  au 
    AAGUGCUU CA UGCAG UAG ug  a
    |||||||| || ||||| ||| ||  u
    UUCACGGA GU ACGUC Auc ac  g
GAUG        A  G     -   u  gu 


Annotation confidence Not enough data
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Genome context
DS562860.1: 32029419-32029477 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cpo-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-17-5p

Accession MIMAT0046857
Description Cavia porcellus cpo-miR-17-5p mature miRNA
Sequence 1 - CAAAGUGCUUACAGUGCAGGUAG - 23
Evidence experimental
Illumina [1]

Mature cpo-miR-17-3p

Accession MIMAT0046858
Description Cavia porcellus cpo-miR-17-3p mature miRNA
Sequence 38 - ACUGCAGUGAAGGCACUUGUAG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344