miRBase entry: cpo-mir-18b

Stem-loop cpo-mir-18b

Accession

MI0038567

Description

Cavia porcellus cpo-mir-18b precursor miRNA

Sequence

UAAGGUGCAUCUAGUGCAGUUAGugaagcagcuuagaaucuacUGCCCUAAAUGCCCCUUCUGGC
.((((.((((.(((.(((((.((................))))))).))).)))).)))).....

Structure

----U    U    C   U     U  ugaagca 
     AAGG GCAU UAG GCAGU AG       g
     |||| |||| ||| ||||| ||        
     UUCC CGUA AUC CGUca uc       c
CGGUC    C    A   C     -  uaagauu

Annotation confidence Not enough data

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Genome context

DS562983.1: 2512897-2512961 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpo-mir-18b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-18b-5p

Accession	MIMAT0046861
Description	Cavia porcellus cpo-miR-18b-5p mature miRNA
Sequence	1 - UAAGGUGCAUCUAGUGCAGUUAG - 23
Evidence	experimental Illumina [1]

Mature cpo-miR-18b-3p

Accession	MIMAT0046862
Description	Cavia porcellus cpo-miR-18b-3p mature miRNA
Sequence	44 - UGCCCUAAAUGCCCCUUCUGGC - 65
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344