miRBase entry: cpo-mir-20b

Stem-loop cpo-mir-20b

Accession

MI0038572

Description

Cavia porcellus cpo-mir-20b precursor miRNA

Sequence

aguacCAAAGUGCUCAUAGUGCAGGUAGUuuuggcauuacucUACUGUAGUGUGGGCACUUCCAGuacu
(((((..(((((((((((.(((((..(((.........)))...))))).)))))))))))...)))))

Structure

     -CA           G     -GU   uuu 
aguac   AAGUGCUCAUA UGCAG   AGU   g
|||||   ||||||||||| |||||   |||   g
ucauG   UUCACGGGUGU AUGUC   uca   c
     ACC           G     AUc   uua

Annotation confidence Not enough data

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Genome context

DS562983.1: 2512676-2512744 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpo-mir-20b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-20b-5p

Accession	MIMAT0046870
Description	Cavia porcellus cpo-miR-20b-5p mature miRNA
Sequence	6 - CAAAGUGCUCAUAGUGCAGGUAGU - 29
Evidence	experimental Illumina [1]

Mature cpo-miR-20b-3p

Accession	MIMAT0046871
Description	Cavia porcellus cpo-miR-20b-3p mature miRNA
Sequence	43 - UACUGUAGUGUGGGCACUUCCAG - 65
Evidence	not_experimental

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344