miRBase entry: cpo-mir-29b-2

Stem-loop cpo-mir-29b-2


Accession
MI0038588
Description
Cavia porcellus cpo-mir-29b-2 precursor miRNA


Sequence

CUGGUUUCACAUGGUGGCUUAGAuuuuucgaucuuuguaucUAGCACCAUUUGAAAUCAGUGUU
(((((((((.((((((.((.((((..............)))))))))))).)))))))))....

Structure
----         C      G  U    uuuucg 
    CUGGUUUCA AUGGUG CU AGAu      a
    ||||||||| |||||| || ||||       
    GACUAAAGU UACCAC GA Ucua      u
UUGU         U      -  -    uguuuc 


Annotation confidence Not enough data
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Genome context
DS562867.1: 15329414-15329477 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpo-mir-29b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-29b-3p

Accession MIMAT0046899
Description Cavia porcellus cpo-miR-29b-3p mature miRNA
Sequence 42 - UAGCACCAUUUGAAAUCAGUGUU - 64
Evidence experimental
Illumina [1]

Mature cpo-miR-29b-2-5p

Accession MIMAT0046900
Description Cavia porcellus cpo-miR-29b-2-5p mature miRNA
Sequence 1 - CUGGUUUCACAUGGUGGCUUAGA - 23
Evidence not_experimental

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344