miRBase entry: cpo-mir-29c

Stem-loop cpo-mir-29c

Accession

MI0038589

Description

Cavia porcellus cpo-mir-29c precursor miRNA

Sequence

ACCGAUUUCUCCUGGUGUUCAGAgucuguuuuugucUAGCACCAUUUGAAAUCGGUUA
(((((((((...(((((((.(((...........))))))))))...)))))))))..

Structure

--         UCC       C   gucu 
  ACCGAUUUC   UGGUGUU AGA    g
  |||||||||   ||||||| |||    u
  UGGCUAAAG   ACCACGA Ucu    u
AU         UUU       -   guuu

Annotation confidence Not enough data

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Genome context

DS562867.1: 15329893-15329950 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-29c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-29c-5p

Accession	MIMAT0046901
Description	Cavia porcellus cpo-miR-29c-5p mature miRNA
Sequence	1 - ACCGAUUUCUCCUGGUGUUCAGA - 23
Evidence	experimental Illumina [1]

Mature cpo-miR-29c-3p

Accession	MIMAT0046902
Description	Cavia porcellus cpo-miR-29c-3p mature miRNA
Sequence	37 - UAGCACCAUUUGAAAUCGGUUA - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344