miRBase entry: cpo-mir-99b

Stem-loop cpo-mir-99b


Accession
MI0038611
Description
Cavia porcellus cpo-mir-99b precursor miRNA


Sequence

CACCCGUAGAACCGACCUUGCGgggccuucgccacacaCAAGCUCGUGUCUGUGGGUCCG
.(((((((((..(((.((((.(((((....))).).).)))).)))..)))))))))...

Structure
--C         AC   C    C - -   c 
   ACCCGUAGA  CGA CUUG G g ggc u
   |||||||||  ||| |||| | | |||  
   UGGGUGUCU  GCU GAAC c c ccg u
GCC         GU   C    a a a   c 


Annotation confidence Not enough data
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Genome context
DS562925.1: 6340368-6340427 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cpo-mir-99b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-99b-5p

Accession MIMAT0046943
Description Cavia porcellus cpo-miR-99b-5p mature miRNA
Sequence 1 - CACCCGUAGAACCGACCUUGCG - 22
Evidence experimental
Illumina [1]

Mature cpo-miR-99b-3p

Accession MIMAT0046944
Description Cavia porcellus cpo-miR-99b-3p mature miRNA
Sequence 39 - CAAGCUCGUGUCUGUGGGUCCG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344