miRBase entry: cpo-mir-106b

Stem-loop cpo-mir-106b

Accession

MI0038619

Description

Cavia porcellus cpo-mir-106b precursor miRNA

Sequence

UAAAGUGCUGACAGUGCAGAUAgugguccucucugugcuaCCGCACUGUGGGUACUUGCUG
..(((((((.(((((((.....(((((.(.....).))))).))))))).)))))))....

Structure

--UA       G       AGAUA     c u 
    AAGUGCU ACAGUGC     guggu c c
    ||||||| |||||||     ||||| | u
    UUCAUGG UGUCACG     Caucg g c
GUCG       G       ----C     u u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

DS562885.1: 4035937-4035997 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpo-mir-106b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-106b-5p

Accession	MIMAT0046957
Description	Cavia porcellus cpo-miR-106b-5p mature miRNA
Sequence	1 - UAAAGUGCUGACAGUGCAGAUA - 22
Evidence	experimental Illumina [1]

Mature cpo-miR-106b-3p

Accession	MIMAT0046958
Description	Cavia porcellus cpo-miR-106b-3p mature miRNA
Sequence	41 - CCGCACUGUGGGUACUUGCUG - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344