miRBase entry: cpo-mir-125a

Stem-loop cpo-mir-125a


Accession
MI0038624
Description
Cavia porcellus cpo-mir-125a precursor miRNA


Sequence

UCCCUGAGACCCUUUAACCUGUGAggacauccagggucACAGGUGAGGUUCUUGGGAGCC
((((.((((.((((..((((((((((....))....)))))))))))).))))))))...

Structure
---    U    C    UA        ----  a 
   UCCC GAGA CCUU  ACCUGUGA    gg c
   |||| |||| ||||  ||||||||    ||  
   AGGG UUCU GGAG  UGGACAcu    cc a
CCG    -    U    --        ggga  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
DS562925.1: 6339828-6339887 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cpo-mir-125a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-125a-5p

Accession MIMAT0046965
Description Cavia porcellus cpo-miR-125a-5p mature miRNA
Sequence 1 - UCCCUGAGACCCUUUAACCUGUGA - 24
Evidence experimental
Illumina [1]

Mature cpo-miR-125a-3p

Accession MIMAT0046966
Description Cavia porcellus cpo-miR-125a-3p mature miRNA
Sequence 39 - ACAGGUGAGGUUCUUGGGAGCC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344