miRBase entry: cpo-mir-138-1

Stem-loop cpo-mir-138-1


Accession
MI0038644
Description
Cavia porcellus cpo-mir-138-1 precursor miRNA


Sequence

AGCUGGUGUUGUGAAUCAGGCCGuugcccaucagagaacgGCUACUUCACAACACCAGGGU
..(((((((((((((...(((((((..(.....)..)))))))..)))))))))))))...

Structure
-AG             UCA       gc c 
   CUGGUGUUGUGAA   GGCCGuu  c a
   |||||||||||||   |||||||  | u
   GACCACAACACUU   UCGgcaa  g c
UGG             -CA       ga a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
DS562862.1: 45796470-45796530 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpo-mir-138-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-138-5p

Accession MIMAT0046999
Description Cavia porcellus cpo-miR-138-5p mature miRNA
Sequence 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
Evidence experimental
Illumina [1]

Mature cpo-miR-138-3p

Accession MIMAT0047000
Description Cavia porcellus cpo-miR-138-3p mature miRNA
Sequence 41 - GCUACUUCACAACACCAGGGU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344