miRBase entry: cpo-mir-200b

Stem-loop cpo-mir-200b

Accession

MI0038693

Description

Cavia porcellus cpo-mir-200b precursor miRNA

Sequence

CAUCUUACUGGGCAGCAUUGGAuggugucuggucucUAAUACUGCCUGGUAAUGAUGAC
(((((((((((((((.((((((.((.......)))))))).))))))))))).))))..

Structure

--    -           C      u  ug 
  CAUC UUACUGGGCAG AUUGGA gg  u
  |||| ||||||||||| |||||| ||  c
  GUAG AAUGGUCCGUC UAAUcu cu  u
CA    U           A      -  gg

Annotation confidence Not enough data

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Genome context

DS563041.1: 1150409-1150467 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpo-mir-200b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-200b-5p

Accession	MIMAT0047091
Description	Cavia porcellus cpo-miR-200b-5p mature miRNA
Sequence	1 - CAUCUUACUGGGCAGCAUUGGA - 22
Evidence	experimental Illumina [1]

Mature cpo-miR-200b-3p

Accession	MIMAT0047092
Description	Cavia porcellus cpo-miR-200b-3p mature miRNA
Sequence	37 - UAAUACUGCCUGGUAAUGAUGAC - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344