miRBase entry: cpo-mir-212

Stem-loop cpo-mir-212


Accession
MI0038704
Description
Cavia porcellus cpo-mir-212 precursor miRNA


Sequence

ACCUUGGCUCUAGACUGCUUACUgcccgggccgcccucagUAACAGUCUCCAGUCACGGCCA
.((.(((((..((((((.((((((...(((...))).))))))))))))..))))).))...

Structure
--A  U     CU      C      ccc   c 
   CC UGGCU  AGACUG UUACUg   ggg  
   || |||||  |||||| ||||||   ||| c
   GG ACUGA  UCUGAC AAUgac   ccc  
ACC  C     CC      -      --u   g 


Annotation confidence Not enough data
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Genome context
DS562887.1: 20418791-20418852 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpo-mir-212
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-212-5p

Accession MIMAT0047113
Description Cavia porcellus cpo-miR-212-5p mature miRNA
Sequence 1 - ACCUUGGCUCUAGACUGCUUACU - 23
Evidence experimental
Illumina [1]

Mature cpo-miR-212-3p

Accession MIMAT0047114
Description Cavia porcellus cpo-miR-212-3p mature miRNA
Sequence 41 - UAACAGUCUCCAGUCACGGCCA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344