miRBase entry: cpo-mir-216a

Stem-loop cpo-mir-216a

Accession

MI0038707

Description

Cavia porcellus cpo-mir-216a precursor miRNA

Sequence

UAAUCUCAGCUGGCAACUGUGAGaugcucauguaaucccuCACAGUGGUCUCUGGGAUUAUG
(((((((((..(((.((((((((.(((....)))....)))))))).))).)))))))))..

Structure

--         CU   A        ---a   u 
  UAAUCUCAG  GGC ACUGUGAG    ugc c
  |||||||||  ||| ||||||||    |||  
  AUUAGGGUC  CUG UGACACuc    aug a
GU         -U   G        ccua   u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

DS562903.1: 8647413-8647474 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpo-mir-216a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-216a-5p

Accession	MIMAT0047119
Description	Cavia porcellus cpo-miR-216a-5p mature miRNA
Sequence	1 - UAAUCUCAGCUGGCAACUGUGAG - 23
Evidence	experimental Illumina [1]

Mature cpo-miR-216a-3p

Accession	MIMAT0047120
Description	Cavia porcellus cpo-miR-216a-3p mature miRNA
Sequence	41 - CACAGUGGUCUCUGGGAUUAUG - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344