miRBase entry: cpo-mir-222

Stem-loop cpo-mir-222

Accession

MI0038714

Description

Cavia porcellus cpo-mir-222 precursor miRNA

Literature search

1 open access papers mention cpo-mir-222
(2 sentences)

Sequence

GGCUCAGUAGCCAGUGUAGAUCCugucuuuuguaaucagcAGCUACAUCUGGCUACUGGGUCUC
(((((((((((((((((((...(((...........)))...))))).))))))))))))))..

Structure

--              -     AUC   ucuu 
  GGCUCAGUAGCCAG UGUAG   Cug    u
  |||||||||||||| |||||   |||    u
  CUGGGUCAUCGGUC ACAUC   gac    g
CU              U     GAc   uaau

Annotation confidence Not enough data

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Genome context

DS562888.1: 12034584-12034647 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-222

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-222-5p

Accession	MIMAT0047132
Description	Cavia porcellus cpo-miR-222-5p mature miRNA
Sequence	1 - GGCUCAGUAGCCAGUGUAGAUCC - 23
Evidence	experimental Illumina [1]

Mature cpo-miR-222-3p

Accession	MIMAT0047133
Description	Cavia porcellus cpo-miR-222-3p mature miRNA
Sequence	41 - AGCUACAUCUGGCUACUGGGUCUC - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344