miRBase entry: cpo-mir-224

Stem-loop cpo-mir-224


Accession
MI0038716
Description
Cavia porcellus cpo-mir-224 precursor miRNA


Sequence

UAAGUCACUAGUGGUUCCGUUUAGuagauguuugugcauuguuucaAAAUGGUGCCCUAGUGACUACAA
..(((((((((.(((.((((((.(..(((((....)))))....).)))))).))))))))))))....

Structure
--UA         U   U      A --ua     u 
    AGUCACUAG GGU CCGUUU G    gaugu u
    ||||||||| ||| |||||| |    |||||  
    UCAGUGAUC CCG GGUAAA c    uuacg g
AACA         -   U      a uuug     u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
DS563052.1: 1056776-1056844 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cpo-mir-224
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-224-5p

Accession MIMAT0047136
Description Cavia porcellus cpo-miR-224-5p mature miRNA
Sequence 1 - UAAGUCACUAGUGGUUCCGUUUAG - 24
Evidence experimental
Illumina [1]

Mature cpo-miR-224-3p

Accession MIMAT0047137
Description Cavia porcellus cpo-miR-224-3p mature miRNA
Sequence 47 - AAAUGGUGCCCUAGUGACUACAA - 69
Evidence not_experimental

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344