miRBase entry: cpo-mir-301b

Stem-loop cpo-mir-301b

Accession

MI0038720

Description

Cavia porcellus cpo-mir-301b precursor miRNA

Sequence

GCUCUGACGAGGUUGCACUACUgugcucugagaagCAGUGCAAUGAUAUUGUCAAAGCAU
(((.((((((.((((((((.((...........)).))))))))....)))))).)))..

Structure

--   C      ---G        A  gugc 
  GCU UGACGA    GUUGCACU CU    u
  ||| ||||||    |||||||| ||    c
  CGA ACUGUU    UAACGUGA ga    u
UA   A      AUAG        C  agag

Annotation confidence Not enough data

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Genome context

DS562859.1: 19664333-19664392 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-301b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-301b-5p

Accession	MIMAT0047144
Description	Cavia porcellus cpo-miR-301b-5p mature miRNA
Sequence	1 - GCUCUGACGAGGUUGCACUACU - 22
Evidence	experimental Illumina [1]

Mature cpo-miR-301b-3p

Accession	MIMAT0047145
Description	Cavia porcellus cpo-miR-301b-3p mature miRNA
Sequence	36 - CAGUGCAAUGAUAUUGUCAAAGCAU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344