miRBase entry: cpo-mir-377

Stem-loop cpo-mir-377

Accession

MI0038757

Description

Cavia porcellus cpo-mir-377 precursor miRNA

Sequence

AGAGGUUGCCCUUGGUGAAUUCgcuuuauguauguugaAUCACACAAAGGCAACUUUUGU
((((((((((.(((((((.(((((.........).)))))))).))).))))))))))..

Structure

--          C   -    A    - uuu 
  AGAGGUUGCC UUG GUGA UUCg c   a
  |||||||||| ||| |||| |||| |   u
  UUUUCAACGG AAC CACU Aagu g   g
UG          A   A    -    u uau

Annotation confidence Not enough data

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Genome context

DS562966.1: 1114436-1114495 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from cpo-mir-377

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-377-5p

Accession	MIMAT0047217
Description	Cavia porcellus cpo-miR-377-5p mature miRNA
Sequence	1 - AGAGGUUGCCCUUGGUGAAUUC - 22
Evidence	experimental Illumina [1]

Mature cpo-miR-377-3p

Accession	MIMAT0047218
Description	Cavia porcellus cpo-miR-377-3p mature miRNA
Sequence	39 - AUCACACAAAGGCAACUUUUGU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344