miRBase entry: cpo-mir-449a

Stem-loop cpo-mir-449a


Accession
MI0038777
Description
Cavia porcellus cpo-mir-449a precursor miRNA


Sequence

UGGCAGUGUAUUGUUAGCUGGUugaauauauauuauuagCAGCUAACAUACAACUGCUAUC
(((((((((((.((((((((....((((.....))))..)))))))))))).)))))))..

Structure
--       -    U        GUug    u 
  UGGCAGU GUAU GUUAGCUG    aaua a
  ||||||| |||| ||||||||    |||| u
  AUCGUCA CAUA CAAUCGAC    uuau a
CU       A    -        --ga    u 


Annotation confidence Not enough data
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Genome context
DS562884.1: 6900585-6900645 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpo-mir-449a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-449a-5p

Accession MIMAT0047257
Description Cavia porcellus cpo-miR-449a-5p mature miRNA
Sequence 1 - UGGCAGUGUAUUGUUAGCUGGU - 22
Evidence experimental
Illumina [1]

Mature cpo-miR-449a-3p

Accession MIMAT0047258
Description Cavia porcellus cpo-miR-449a-3p mature miRNA
Sequence 40 - CAGCUAACAUACAACUGCUAUC - 61
Evidence not_experimental

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344