miRBase entry: cpo-mir-449c

Stem-loop cpo-mir-449c


Accession
MI0038778
Description
Cavia porcellus cpo-mir-449c precursor miRNA


Sequence

AGGCAGUGCAUUGCUAGCUGGCUGUUaagauuuuucauuuuagCAGUUGCUAGUUGCACUCCUCU
(((.((((((..((((((.((((((((((((.....)))))))))))))))))))))))))))..

Structure
--   C      UU      U            u 
  AGG AGUGCA  GCUAGC GGCUGUUaagau u
  ||| ||||||  |||||| |||||||||||| u
  UCC UCACGU  UGAUCG UUGACgauuuua u
UC   -      --      -            c 


Annotation confidence Not enough data
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Genome context
DS562884.1: 6899940-6900004 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpo-mir-449c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-449c-5p

Accession MIMAT0047259
Description Cavia porcellus cpo-miR-449c-5p mature miRNA
Sequence 1 - AGGCAGUGCAUUGCUAGCUGGCUGUU - 26
Evidence experimental
Illumina [1]

Mature cpo-miR-449c-3p

Accession MIMAT0047260
Description Cavia porcellus cpo-miR-449c-3p mature miRNA
Sequence 44 - CAGUUGCUAGUUGCACUCCUCU - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344