miRBase entry: cpo-mir-487a

Stem-loop cpo-mir-487a


Accession
MI0038789
Description
Cavia porcellus cpo-mir-487a precursor miRNA


Sequence

GUGGUUAUCCCUGCUGUGUUCGcuuuauuuaugacgAAUCAUACAGGGACAUCCAGUU
.(((...((((((.(((((((((.........).)))).))))))))))...)))...

Structure
--G   UUA      C    -    - uuu 
   UGG   UCCCUG UGUG UUCG c   a
   |||   |||||| |||| |||| |   u
   ACC   AGGGAC AUAC AAgc g   u
UUG   UAC      -    U    a uau 


Annotation confidence Not enough data
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Genome context
DS562966.1: 1104622-1104679 [+]
Clustered miRNAs
18 other miRNAs are < 10 kb from cpo-mir-487a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-487a-5p

Accession MIMAT0047279
Description Cavia porcellus cpo-miR-487a-5p mature miRNA
Sequence 1 - GUGGUUAUCCCUGCUGUGUUCG - 22
Evidence experimental
Illumina [1]

Mature cpo-miR-487a-3p

Accession MIMAT0047280
Description Cavia porcellus cpo-miR-487a-3p mature miRNA
Sequence 37 - AAUCAUACAGGGACAUCCAGUU - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344