miRBase entry: cpo-mir-493

Stem-loop cpo-mir-493


Accession
MI0038793
Description
Cavia porcellus cpo-mir-493 precursor miRNA


Sequence

UUGUACAUAGUAGGCUUUCAUUcacucguguacuuauacggUGAGGGUCUACUGUGUGCCAGG
..(((((((((((((((((((.....(((((....))))))))))))))))))))))))....

Structure
--UU                   Ucacu     a 
    GUACAUAGUAGGCUUUCAU     cgugu c
    |||||||||||||||||||     |||||  
    CGUGUGUCAUCUGGGAGUg     gcaua u
GGAC                   -----     u 


Annotation confidence Not enough data
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Genome context
DS562966.1: 942145-942207 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cpo-mir-493
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-493-5p

Accession MIMAT0047287
Description Cavia porcellus cpo-miR-493-5p mature miRNA
Sequence 1 - UUGUACAUAGUAGGCUUUCAUU - 22
Evidence experimental
Illumina [1]

Mature cpo-miR-493-3p

Accession MIMAT0047288
Description Cavia porcellus cpo-miR-493-3p mature miRNA
Sequence 42 - UGAGGGUCUACUGUGUGCCAGG - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344