miRBase entry: cpo-mir-501

Stem-loop cpo-mir-501


Accession
MI0038801
Description
Cavia porcellus cpo-mir-501 precursor miRNA


Sequence

AAUCCUUUGUCCCUGAGUGAGAAUGCUuucagaaugcAGUGCUCCCAGGCAAGGGUUCUG
...((((((..((((.(.(((..(((.........)))...)))))))))))))).....

Structure
--AAU      UC    A U   -AA   Uuu 
     CCUUUG  CCUG G GAG   UGC   c
     ||||||  |||| | |||   |||   a
     GGGAAC  GGAC C CUC   Acg   g
GUCUU      --    - -   GUG   uaa 


Annotation confidence Not enough data
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Genome context
DS562987.1: 3009773-3009832 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from cpo-mir-501
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-501-5p

Accession MIMAT0047303
Description Cavia porcellus cpo-miR-501-5p mature miRNA
Sequence 1 - AAUCCUUUGUCCCUGAGUGAGAAUGCU - 27
Evidence experimental
Illumina [1]

Mature cpo-miR-501-3p

Accession MIMAT0047304
Description Cavia porcellus cpo-miR-501-3p mature miRNA
Sequence 38 - AGUGCUCCCAGGCAAGGGUUCUG - 60
Evidence not_experimental

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344