miRBase entry: cpo-mir-542

Stem-loop cpo-mir-542

Accession

MI0038820

Description

Cavia porcellus cpo-mir-542 precursor miRNA

Sequence

UCGGGGAUCAUCAUGUCACCAGauaccauugugcgcuUGUGACAGAUUGAUAACUGAAA
((((..((((...((((((.((.(((....)))..)).))))))...))))..))))..

Structure

--    GG    UCA      C  -a   c 
  UCGG  AUCA   UGUCAC AG  uac a
  ||||  ||||   |||||| ||  |||  
  AGUC  UAGU   ACAGUG uc  gug u
AA    AA    UAG      U  gc   u

Annotation confidence Not enough data

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Genome context

DS562983.1: 2874159-2874217 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpo-mir-542

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-542-5p

Accession	MIMAT0047341
Description	Cavia porcellus cpo-miR-542-5p mature miRNA
Sequence	1 - UCGGGGAUCAUCAUGUCACCAG - 22
Evidence	experimental Illumina [1]

Mature cpo-miR-542-3p

Accession	MIMAT0047342
Description	Cavia porcellus cpo-miR-542-3p mature miRNA
Sequence	38 - UGUGACAGAUUGAUAACUGAAA - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344