miRBase entry: cpo-mir-545

Stem-loop cpo-mir-545


Accession
MI0038822
Description
Cavia porcellus cpo-mir-545 precursor miRNA


Sequence

CCACAGUACAUGUUUAUUGGAUGaauaaaugaaugagucaUCAACAGACAUUUAUUGUGUGC
.(((((((.((((((....(((((.............)))))...)))))).)))))))...

Structure
--C       C      AUUG     auaaa 
   CACAGUA AUGUUU    GAUGa     u
   ||||||| ||||||    |||||     g
   GUGUUAU UACAGA    CUacu     a
CGU       U      -CAA     gagua 


Annotation confidence Not enough data
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Genome context
DS562881.1: 22993124-22993185 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cpo-mir-545
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpo-miR-545-5p

Accession MIMAT0047345
Description Cavia porcellus cpo-miR-545-5p mature miRNA
Sequence 1 - CCACAGUACAUGUUUAUUGGAUG - 23
Evidence experimental
Illumina [1]

Mature cpo-miR-545-3p

Accession MIMAT0047346
Description Cavia porcellus cpo-miR-545-3p mature miRNA
Sequence 41 - UCAACAGACAUUUAUUGUGUGC - 62
Evidence not_experimental

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344