miRBase entry: cpo-mir-654

Stem-loop cpo-mir-654

Accession

MI0038829

Description

Cavia porcellus cpo-mir-654 precursor miRNA

Sequence

AUGGUGGGCUGCGGAACAUGUGcuggccucgggccaCAUGUCUGCCGACCAUCACCU
.((((((.(.(((((.(((((...((((...)))))))))))))).).))))))...

Structure

--A      G U     A     Gcu    u 
   UGGUGG C GCGGA CAUGU   ggcc  
   |||||| | ||||| |||||   |||| c
   ACUACC G CGUCU GUACa   ccgg  
UCC      A C     -     ---    g

Annotation confidence Not enough data

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Genome context

DS562966.1: 1095544-1095600 [+]

Clustered miRNAs

19 other miRNAs are < 10 kb from cpo-mir-654

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-654-5p

Accession	MIMAT0047359
Description	Cavia porcellus cpo-miR-654-5p mature miRNA
Sequence	1 - AUGGUGGGCUGCGGAACAUGUG - 22
Evidence	experimental Illumina [1]

Mature cpo-miR-654-3p

Accession	MIMAT0047360
Description	Cavia porcellus cpo-miR-654-3p mature miRNA
Sequence	37 - CAUGUCUGCCGACCAUCACCU - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344